Perhaps. Perhaps not. If you have an algorithm that is better implemented in hardware, you might well see better performance executing it on a GPU (for example, if you want to mine bitcoins).
Really, FPGAs are meant for prototyping hardware; you synthesize your ASIC onto the FPGA and check it for functionality.
Of course, there's a reason you're making that ASIC.
Or you don't do an ASIC and ship the FPGA. That's common as well (for the big manufacturers it's cheaper to do an ASIC, for the not so big, it's more common to sell the FPGA)
Throw it into an FPGA